Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC82_370Mis12-Mtw1 protein family. (96 aa)    
Predicted Functional Partners:
VC82_369
Pfam:pfam05164 Cell division protein ZapA.
 
     0.853
VC82_2272
Hypothetical protein.
  
     0.763
VC82_2198
valyl-tRNA synthetase; Pfam:pfam00887 Acyl CoA binding protein.
  
     0.749
VC82_2273
Hypothetical protein; Pfam:pfam14289 Domain of unknown function (DUF4369).
  
     0.736
VC82_1887
Pfam:pfam13568 Outer membrane protein beta-barrel domain.
  
     0.729
VC82_41
Membrane protein; Pfam:pfam13715 Domain of unknown function (DUF4480).
  
     0.712
VC82_1367
Uracil phosphoribosyltransferase.
  
     0.702
VC82_2654
Hypothetical protein; Pfam:pfam13557 Putative MetA-pathway of phenol degradation.
  
     0.694
VC82_1232
Hypothetical protein.
  
     0.693
VC82_1249
Hypothetical protein.
  
     0.687
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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