Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC82_372TonB-dependent receptor; Pfam:pfam13715 Domain of unknown function (DUF4480). (822 aa)    
Predicted Functional Partners:
VC82_371
Pfam:pfam01551 Peptidase family M23.
       0.820
VC82_373
Hypothetical protein.
       0.785
VC82_2998
Conserved beta helix fold protein.
  
     0.774
VC82_369
Pfam:pfam05164 Cell division protein ZapA.
       0.604
VC82_370
Mis12-Mtw1 protein family.
       0.591
VC82_965
Pfam:pfam00403 Heavy-metal-associated domain.
  
     0.487
VC82_2121
Hypothetical protein.
  
     0.477
VC82_827
Hypothetical protein.
  
     0.443
VC82_2126
PorT protein; Pfam:pfam13568 Outer membrane protein beta-barrel domain.
  
     0.435
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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