Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
VC82_373Hypothetical protein. (217 aa)    
Predicted Functional Partners:
VC82_371
Pfam:pfam01551 Peptidase family M23.
 
     0.820
VC82_372
TonB-dependent receptor; Pfam:pfam13715 Domain of unknown function (DUF4480).
       0.785
VC82_2157
Hypothetical protein; Pfam:pfam13715 Domain of unknown function (DUF4480).
  
     0.758
VC82_503
Conserved hypothetical lipoprotein.
  
     0.730
VC82_2451
Hypothetical protein.
  
     0.709
VC82_1150
Hypothetical protein; Pfam:pfam14092 Domain of unknown function (DUF4270).
  
     0.687
VC82_1412
Hypothetical protein.
  
     0.674
VC82_1278
Hypothetical protein.
  
     0.665
VC82_1330
Hypothetical protein; Pfam:pfam13585 C-terminal domain of CHU protein family.
  
     0.637
VC82_1063
Lysine transporter LysE.
  
     0.620
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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