STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC82_390Pfam:pfam11387 Protein of unknown function (DUF2795). (74 aa)    
Predicted Functional Partners:
VC82_1531
Pfam:pfam11307 Protein of unknown function (DUF3109).
  
     0.762
secA
Protein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.
 
     0.715
VC82_426
tRNA nucleotidyltransferase; Pfam:pfam01743 Poly A polymerase head domain; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
     0.659
VC82_1188
Molecular chaperone DnaK.
  
     0.654
VC82_3035
Hypothetical protein; Pfam:pfam01192 RNA polymerase Rpb6.
  
     0.649
VC82_2012
Outer membrane protein assembly complex, YaeT protein; Pfam:pfam01103 Surface antigen.
  
     0.635
VC82_2175
Hypothetical protein; Pfam:pfam02591 Putative zinc ribbon domain.
  
     0.601
VC82_251
Hypothetical protein.
  
     0.594
VC82_389
Pfam:pfam01923 Cobalamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
       0.570
rpmF
Pfam:pfam01783 Ribosomal L32p protein family; Belongs to the bacterial ribosomal protein bL32 family.
  
     0.556
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.