Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC82_401Hypothetical protein; Pfam:pfam13801 Heavy-metal resistance. (485 aa)    
Predicted Functional Partners:
VC82_402
Hypothetical protein.
 
     0.957
VC82_403
RNA polymerase sigma factor; Pfam:pfam04542 Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.829
VC82_854
Ribonuclease HII.
  
     0.649
VC82_49
Adenylosuccinate lyase.
  
     0.632
VC82_2659
Hypothetical protein.
  
     0.621
VC82_260
Riboflavin synthase subunit beta.
  
     0.603
VC82_2249
Pfam:pfam00584 SecE/Sec61-gamma subunits of protein translocation complex; Belongs to the SecE/SEC61-gamma family.
  
     0.595
VC82_404
Pfam:pfam01263 Aldose 1-epimerase.
       0.543
VC82_2393
Hypothetical protein.
  
     0.489
VC82_405
Pfam:pfam03308 ArgK protein.
       0.472
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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