Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC82_405Pfam:pfam03308 ArgK protein. (347 aa)    
Predicted Functional Partners:
VC82_1603
Pfam:pfam01642 Methylmalonyl-CoA mutase.
 
 0.999
VC82_247
Pfam:pfam01642 Methylmalonyl-CoA mutase.
 
 0.988
icmF
Methylmalonyl-CoA mutase; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
 
 
0.978
VC82_1303
Methylmalonyl-CoA epimerase; Pfam:pfam13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.
  
 0.888
VC82_404
Pfam:pfam01263 Aldose 1-epimerase.
       0.646
VC82_401
Hypothetical protein; Pfam:pfam13801 Heavy-metal resistance.
       0.472
VC82_402
Hypothetical protein.
       0.472
VC82_407
Lysylphosphatidylglycerol synthetase; Pfam:pfam03706 Uncharacterized protein family (UPF0104).
       0.458
VC82_403
RNA polymerase sigma factor; Pfam:pfam04542 Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
       0.454
VC82_406
Pfam:pfam00535 Glycosyl transferase family 2.
       0.444
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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