Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC82_411MATE efflux family protein; Pfam:pfam01554 MatE. (456 aa)    
Predicted Functional Partners:
VC82_410
Hypothetical protein.
 
     0.850
VC82_409
Phosphoesterase PA-phosphatase-related protein; Pfam:pfam01569 PAP2 superfamily.
  
    0.791
VC82_408
Pfam:pfam13231 Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
    0.788
VC82_2330
Pfam:pfam00494 Squalene/phytoene synthase.
   
    0.531
VC82_320
Pfam:pfam00575 S1 RNA binding domain.
  
    0.529
VC82_412
MazG family protein; Pfam:pfam03819 MazG nucleotide pyrophosphohydrolase domain.
     
 0.443
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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