Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC82_413Periplasmic beta-glucosidase; Pfam:pfam00933 Glycosyl hydrolase family 3 N terminal domain; Belongs to the glycosyl hydrolase 3 family. (749 aa)    
Predicted Functional Partners:
VC82_331
Pfam:pfam01055 Glycosyl hydrolases family 31; Belongs to the glycosyl hydrolase 31 family.
 
  
 0.928
VC82_414
Endo-1,4-beta-xylanase; Pfam:pfam07859 alpha/beta hydrolase fold.
     
 0.742
VC82_415
G-D-S-L family lipolytic protein; Pfam:pfam13472 GDSL-like Lipase/Acylhydrolase family.
     
 0.731
VC82_416
beta-N-acetylhexosaminidase; Pfam:pfam00728 Glycosyl hydrolase family 20, catalytic domain.
 
   
 0.625
VC82_637
Laminarinase; Pfam:pfam00722 Glycosyl hydrolases family 16.
  
 0.623
VC82_116
Alpha-glucosidase; Pfam:pfam10566 Glycoside hydrolase 97.
 
   
 0.535
VC82_412
MazG family protein; Pfam:pfam03819 MazG nucleotide pyrophosphohydrolase domain.
       0.514
VC82_1595
Pfam:pfam00722 Glycosyl hydrolases family 16.
 
  
 0.491
VC82_1938
Sugar transporter; Pfam:pfam07690 Major Facilitator Superfamily.
 
     0.449
VC82_707
Pfam:pfam07075 Protein of unknown function (DUF1343).
 
    0.410
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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