STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC82_414Endo-1,4-beta-xylanase; Pfam:pfam07859 alpha/beta hydrolase fold. (292 aa)    
Predicted Functional Partners:
VC82_2680
Lipolytic protein G-D-S-L family; Pfam:pfam13472 GDSL-like Lipase/Acylhydrolase family.
  
 0.903
VC82_415
G-D-S-L family lipolytic protein; Pfam:pfam13472 GDSL-like Lipase/Acylhydrolase family.
 
  
 0.885
VC82_732
Nucleotide-sugar epimerase; Pfam:pfam13460 NADH(P)-binding.
  
 
 0.758
VC82_413
Periplasmic beta-glucosidase; Pfam:pfam00933 Glycosyl hydrolase family 3 N terminal domain; Belongs to the glycosyl hydrolase 3 family.
       0.726
VC82_516
(2Fe-2S)-binding protein.
  
   0.648
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.612
VC82_2492
Acyl carrier protein.
   
 
 0.612
VC82_1008
FeS-binding protein; Pfam:pfam13237 4Fe-4S dicluster domain.
   
   0.607
VC82_2718
Ferredoxin 2 with 4Fe-4S binding domain.
   
   0.607
VC82_416
beta-N-acetylhexosaminidase; Pfam:pfam00728 Glycosyl hydrolase family 20, catalytic domain.
   
   0.603
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.