Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC82_419Hypothetical protein. (148 aa)    
Predicted Functional Partners:
VC82_1079
Pfam:pfam02602 Uroporphyrinogen-III synthase HemD.
  
     0.764
VC82_1290
DNA-binding protein; Pfam:pfam02620 Uncharacterized ACR, COG1399.
  
     0.760
VC82_1531
Pfam:pfam11307 Protein of unknown function (DUF3109).
  
     0.728
VC82_2577
Hypothetical protein; Pfam:pfam14123 Domain of unknown function (DUF4290).
  
     0.721
VC82_3035
Hypothetical protein; Pfam:pfam01192 RNA polymerase Rpb6.
  
     0.705
VC82_641
DoxX family protein; Pfam:pfam07681 DoxX.
  
     0.702
VC82_287
Hypothetical protein; Pfam:pfam03993 Domain of Unknown Function (DUF349).
  
     0.695
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
       0.690
VC82_421
Putative Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
       0.690
VC82_254
Pfam:pfam08889 WbqC-like protein family.
  
     0.664
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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