Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
VC82_428Hypothetical protein. (164 aa)    
Predicted Functional Partners:
VC82_429
Pfam:pfam04245 37-kD nucleoid-associated bacterial protein.
 
     0.801
VC82_21
Hypothetical protein; Pfam:pfam14127 Domain of unknown function (DUF4294).
  
     0.771
VC82_1087
Pfam:pfam11297 Protein of unknown function (DUF3098).
  
     0.770
VC82_950
Gliding motility protein GldO.
  
     0.762
VC82_2569
Hypothetical protein.
  
     0.734
VC82_2577
Hypothetical protein; Pfam:pfam14123 Domain of unknown function (DUF4290).
  
     0.726
VC82_951
Gliding motility protein GldM; Pfam:pfam12080 GldM C-terminal domain.
  
     0.721
VC82_972
Rod shape-determining protein MreD.
  
     0.716
VC82_1290
DNA-binding protein; Pfam:pfam02620 Uncharacterized ACR, COG1399.
  
     0.712
VC82_2205
Orotate phosphoribosyltransferase.
  
     0.697
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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