Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC82_434Pfam:pfam12730 ABC-2 family transporter protein. (277 aa)    
Predicted Functional Partners:
VC82_433
ABC transporter-related protein; Pfam:pfam00005 ABC transporter.
 
 
 0.966
uvrB
UvrABC system protein B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and [...]
    
  0.937
VC82_435
Fibronectin, type III; Pfam:pfam13585 C-terminal domain of CHU protein family.
 
     0.741
VC82_52
Hypothetical protein; Pfam:pfam14060 Domain of unknown function (DUF4252).
  
     0.699
VC82_53
Conserved hypothetical periplasmic protein; Pfam:pfam14060 Domain of unknown function (DUF4252).
  
     0.684
VC82_1227
AAA-4 family protein; Pfam:pfam04326 Divergent AAA domain.
  
     0.675
VC82_1056
Hypothetical protein.
  
     0.627
VC82_2017
Hypothetical protein; Pfam:pfam13239 2TM domain.
  
    0.622
VC82_811
Pfam:pfam13489 Methyltransferase domain.
  
     0.579
VC82_1155
Esterase; Pfam:pfam00756 Putative esterase.
  
     0.570
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.