Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC82_438Hypothetical protein. (133 aa)    
Predicted Functional Partners:
VC82_128
Pfam:pfam07766 LETM1-like protein.
  
     0.697
VC82_1107
Hypothetical protein.
  
     0.670
VC82_1637
Hypothetical protein.
  
     0.647
VC82_3005
Hypothetical protein.
  
     0.622
VC82_1571
Hypothetical protein.
  
     0.575
VC82_2198
valyl-tRNA synthetase; Pfam:pfam00887 Acyl CoA binding protein.
  
     0.575
VC82_993
Hypothetical protein.
  
     0.556
VC82_1976
Hypothetical protein.
  
     0.551
VC82_854
Ribonuclease HII.
  
     0.551
VC82_54
Hypothetical protein.
  
     0.527
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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