Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
VC82_456Pfam:pfam07610 Protein of unknown function (DUF1573). (162 aa)    
Predicted Functional Partners:
VC82_455
Pfam:pfam02699 Preprotein translocase subunit.
       0.820
VC82_457
N utilization substance protein B; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
       0.705
VC82_1531
Pfam:pfam11307 Protein of unknown function (DUF3109).
  
     0.559
VC82_419
Hypothetical protein.
 
     0.559
VC82_2598
Hypothetical protein; Pfam:pfam10728 Domain of unknown function (DUF2520).
  
     0.470
VC82_1079
Pfam:pfam02602 Uroporphyrinogen-III synthase HemD.
  
     0.451
VC82_3035
Hypothetical protein; Pfam:pfam01192 RNA polymerase Rpb6.
  
     0.434
VC82_2656
Membrane protein.
  
     0.426
VC82_641
DoxX family protein; Pfam:pfam07681 DoxX.
  
     0.412
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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