Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
VC82_459Pfam:pfam11680 Protein of unknown function (DUF3276). (125 aa)    
Predicted Functional Partners:
VC82_2577
Hypothetical protein; Pfam:pfam14123 Domain of unknown function (DUF4290).
  
     0.740
VC82_1079
Pfam:pfam02602 Uroporphyrinogen-III synthase HemD.
  
     0.705
VC82_2717
Pfam:pfam05893 Acyl-CoA reductase (LuxC).
  
     0.677
VC82_1214
Hypothetical protein.
  
     0.667
VC82_1999
Putative auxin-regulated protein; Pfam:pfam03321 GH3 auxin-responsive promoter.
  
     0.618
VC82_2092
Gliding motility-associated lipoprotein GldB.
  
     0.602
VC82_1128
Gliding motility-associated lipoprotein GldD.
  
     0.594
VC82_1261
Hypothetical protein; Pfam:pfam12705 PD-(D/E)XK nuclease superfamily.
  
     0.577
VC82_2008
CBS domain containing protein.
  
     0.552
VC82_1290
DNA-binding protein; Pfam:pfam02620 Uncharacterized ACR, COG1399.
  
     0.548
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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