Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC82_48Hypothetical protein; Pfam:pfam14376 Heme-binding domain. (155 aa)    
Predicted Functional Partners:
VC82_49
Adenylosuccinate lyase.
       0.577
VC82_2562
Peptidylglycine monooxygenase.
  
 
 0.489
VC82_1824
Pfam:pfam02433 Cytochrome C oxidase, mono-heme subunit/FixO; Belongs to the heme-copper respiratory oxidase family.
   
  
 0.481
VC82_50
Pfam:pfam08328 Adenylosuccinate lyase C-terminal; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
       0.472
VC82_1924
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; Pfam:pfam13247 4Fe-4S dicluster domain.
 
  
 0.423
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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