Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC82_52Hypothetical protein; Pfam:pfam14060 Domain of unknown function (DUF4252). (179 aa)    
Predicted Functional Partners:
VC82_54
Hypothetical protein.
 
     0.911
VC82_53
Conserved hypothetical periplasmic protein; Pfam:pfam14060 Domain of unknown function (DUF4252).
 
     0.905
VC82_317
Ribonuclease Z.
  
     0.766
VC82_55
RNA polymerase, sigma-24 subunit, ECF subfamily; Pfam:pfam08281 Sigma-70, region 4; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.764
VC82_1155
Esterase; Pfam:pfam00756 Putative esterase.
  
     0.760
VC82_1227
AAA-4 family protein; Pfam:pfam04326 Divergent AAA domain.
  
     0.758
VC82_2654
Hypothetical protein; Pfam:pfam13557 Putative MetA-pathway of phenol degradation.
  
     0.758
VC82_1368
Hypothetical protein.
  
     0.757
VC82_1056
Hypothetical protein.
  
     0.748
VC82_1412
Hypothetical protein.
  
     0.743
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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