Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC82_535Hypothetical protein; Pfam:pfam03432 Relaxase/Mobilisation nuclease domain. (350 aa)    
Predicted Functional Partners:
VC82_536
Hypothetical protein.
 
    0.948
VC82_534
DNA-directed RNA polymerase subunit beta.
       0.773
VC82_894
Hypothetical protein.
  
     0.598
VC82_1258
Pfam:pfam13361 UvrD-like helicase C-terminal domain.
  
 
 0.556
VC82_2547
DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
 
 0.495
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 
 0.421
VC82_344
Pfam:pfam13505 Outer membrane protein beta-barrel domain.
  
     0.421
VC82_2906
ATP-dependent DNA helicase; Pfam:pfam13361 UvrD-like helicase C-terminal domain.
  
 
 0.412
VC82_1534
Two-component system sensor histidine kinase/response; Pfam:pfam00072 Response regulator receiver domain.
 
  
 0.408
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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