Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC82_554RNA polymerase subunit sigma-70. (257 aa)    
Predicted Functional Partners:
VC82_547
Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  
 0.772
VC82_626
Hypothetical protein.
  
     0.771
VC82_555
Hypothetical protein.
       0.765
VC82_559
Hypothetical protein.
  
     0.750
VC82_2585
Conserved hypothetical lipoprotein.
  
     0.669
VC82_592
Pfam:pfam12900 Pyridoxamine 5'-phosphate oxidase.
  
     0.655
VC82_2351
Hypothetical protein.
  
     0.647
VC82_475
Hypothetical protein.
  
    0.628
VC82_168
Hypothetical protein; Pfam:pfam07366 SnoaL-like polyketide cyclase.
  
     0.623
VC82_556
Hypothetical protein.
       0.615
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.