Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC82_573Hypothetical protein. (215 aa)    
Predicted Functional Partners:
VC82_2351
Hypothetical protein.
 
     0.589
VC82_2338
Hypothetical protein.
  
     0.582
VC82_574
KWG Leptospira repeat protein.
 
     0.571
VC82_868
Conserved hypothetical lipoprotein.
  
     0.542
VC82_602
Hypothetical protein.
  
     0.512
VC82_575
3-oxoacyl-(Acyl-carrier-protein) reductase; Pfam:pfam00106 short chain dehydrogenase.
       0.510
VC82_554
RNA polymerase subunit sigma-70.
  
     0.464
VC82_576
Hypothetical protein; Pfam:pfam04205 FMN-binding domain.
       0.461
VC82_564
Pfam:pfam00582 Universal stress protein family.
  
     0.439
VC82_288
Hypothetical protein.
  
     0.426
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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