Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC82_592Pfam:pfam12900 Pyridoxamine 5'-phosphate oxidase. (154 aa)    
Predicted Functional Partners:
VC82_626
Hypothetical protein.
  
     0.701
VC82_554
RNA polymerase subunit sigma-70.
  
     0.655
VC82_2334
ABC transporter; Pfam:pfam02687 FtsX-like permease family.
  
     0.648
VC82_2335
Membrane fusion protein; Pfam:pfam13437 HlyD family secretion protein.
  
     0.554
VC82_605
Phosphatidylglycerophosphate synthase; Pfam:pfam01066 CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
     0.552
VC82_213
Hypothetical protein.
  
     0.524
VC82_591
Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family.
       0.520
VC82_2351
Hypothetical protein.
  
     0.489
VC82_623
ABC transporter permease; Pfam:pfam02470 mce related protein.
  
     0.489
VC82_547
Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
     0.465
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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