Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC82_648Phosphodiesterase, MJ0936 family; Pfam:pfam12850 Calcineurin-like phosphoesterase superfamily domain. (164 aa)    
Predicted Functional Partners:
VC82_649
Pyrroloquinoline quinone biosynthesis protein PqqB; Pfam:pfam12706 Beta-lactamase superfamily domain.
     
 0.782
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
 
   0.692
VC82_650
Hypothetical protein.
       0.655
VC82_3035
Hypothetical protein; Pfam:pfam01192 RNA polymerase Rpb6.
  
     0.636
VC82_2902
Restriction endonuclease, type I, EcoRI, R subunit/Type III; Pfam:pfam13588 Type I restriction enzyme R protein N terminus (HSDR_N).
  
     0.560
VC82_419
Hypothetical protein.
  
     0.506
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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