Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC82_676Pfam:pfam00072 Response regulator receiver domain. (144 aa)    
Predicted Functional Partners:
VC82_675
Pfam:pfam07969 Amidohydrolase family.
       0.603
VC82_677
OmpA-like periplasmic protein; Pfam:pfam00691 OmpA family.
       0.590
VC82_678
OmpA-like periplasmic protein; Pfam:pfam00691 OmpA family.
 
     0.471
VC82_2579
Hypothetical protein; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
   
 0.452
VC82_1170
Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
   
 0.439
VC82_2210
Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
   
 0.430
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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