Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC82_678OmpA-like periplasmic protein; Pfam:pfam00691 OmpA family. (359 aa)    
Predicted Functional Partners:
VC82_680
Tetratricopeptide TPR_1 repeat-containing protein; Pfam:pfam12895 Anaphase-promoting complex, cyclosome, subunit 3.
  
 
 0.606
VC82_677
OmpA-like periplasmic protein; Pfam:pfam00691 OmpA family.
 
    
0.561
VC82_679
Hypothetical protein; Pfam:pfam00593 TonB dependent receptor.
     
 0.545
VC82_585
Membrane protein; Pfam:pfam00691 OmpA family.
  
   0.512
VC82_676
Pfam:pfam00072 Response regulator receiver domain.
 
     0.471
VC82_1305
Membrane protein; Pfam:pfam02687 FtsX-like permease family.
  
 
   0.459
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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