Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC82_691Membrane protein. (211 aa)    
Predicted Functional Partners:
VC82_692
Transcriptional regulator; Pfam:pfam13601 Winged helix DNA-binding domain.
 
     0.956
VC82_693
Pfam:pfam06123 Inner membrane protein CreD.
 
     0.859
VC82_690
2-dehydro-3-deoxyphosphooctonate aldolase; Pfam:pfam08818 Domain of unknown function (DU1801).
       0.566
VC82_2079
Transglutaminase domain-containing protein; Pfam:pfam12969 Domain of Unknown Function with PDB structure (DUF3857).
 
     0.462
VC82_2078
Conserved hypothetical periplasmic protein; Pfam:pfam01841 Transglutaminase-like superfamily.
 
     0.459
VC82_2561
Hypothetical protein.
  
     0.446
VC82_694
PHP domain protein.
       0.434
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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