Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC82_698TonB-dependent receptor; Pfam:pfam13715 Domain of unknown function (DUF4480). (1042 aa)    
Predicted Functional Partners:
VC82_697
SusD/RagB family lipoprotein; Pfam:pfam07980 SusD family.
 
     0.942
VC82_1098
Hypothetical protein.
  
     0.545
VC82_500
Conserved hypothetical periplasmic protein; Pfam:pfam07642 Outer membrane protein family (DUF1597).
  
     0.421
VC82_2436
Nucleotidyltransferase; Pfam:pfam08843 Nucleotidyl transferase of unknown function (DUF1814).
  
     0.419
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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