Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC82_704Fibronectin type III domain protein; Pfam:pfam08757 CotH protein. (469 aa)    
Predicted Functional Partners:
VC82_702
Aldose 1-epimerase family protein.
       0.749
VC82_703
Pfam:pfam01546 Peptidase family M20/M25/M40.
       0.745
VC82_2400
Hypothetical protein; Pfam:pfam01289 Thiol-activated cytolysin.
  
    0.562
VC82_701
Hypothetical protein.
       0.512
VC82_2196
Glucose-1-phosphate thymidylyltransferase; Pfam:pfam00483 Nucleotidyl transferase.
  
    0.493
gcvH
Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.
 
      0.418
VC82_2959
Response regulator receiver protein; Pfam:pfam04397 LytTr DNA-binding domain.
  
     0.415
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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