Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC82_706Transmembrane permease; Pfam:pfam12704 MacB-like periplasmic core domain. (413 aa)    
Predicted Functional Partners:
VC82_1305
Membrane protein; Pfam:pfam02687 FtsX-like permease family.
  
  
  0.973
lolD-2
Lipoprotein-releasing system ATP-binding protein LolD; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
 
 0.924
lolD
ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
  
 0.908
VC82_2334
ABC transporter; Pfam:pfam02687 FtsX-like permease family.
  
  
 
0.905
VC82_707
Pfam:pfam07075 Protein of unknown function (DUF1343).
       0.660
VC82_2012
Outer membrane protein assembly complex, YaeT protein; Pfam:pfam01103 Surface antigen.
 
     0.612
VC82_2953
Outer membrane lipoprotein carrier protein LolA.
 
 
 
 0.581
VC82_118
Pfam:pfam00005 ABC transporter.
  
 
 0.560
VC82_2695
Pfam:pfam00005 ABC transporter.
  
 
 0.560
VC82_253
Signal peptidase I; Belongs to the peptidase S26 family.
  
  
 0.555
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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