Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC82_707Pfam:pfam07075 Protein of unknown function (DUF1343). (416 aa)    
Predicted Functional Partners:
VC82_1476
Serine peptidase, family S12; Pfam:pfam00144 Beta-lactamase.
    0.977
VC82_2481
Beta-N-acetylhexosaminidase; Pfam:pfam00933 Glycosyl hydrolase family 3 N terminal domain; Belongs to the glycosyl hydrolase 3 family.
  
 0.875
VC82_706
Transmembrane permease; Pfam:pfam12704 MacB-like periplasmic core domain.
       0.660
VC82_239
Pfam:pfam00933 Glycosyl hydrolase family 3 N terminal domain.
 
    0.655
murQ
N-acetylmuramic acid-6-phosphate etherase; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate.
 
    0.615
VC82_2299
Pfam:pfam00474 Sodium:solute symporter family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
     0.504
VC82_2473
N-acetylglucosamine kinase-like protein.
  
    0.470
VC82_233
Hypothetical protein; Pfam:pfam00144 Beta-lactamase.
 
    0.434
VC82_413
Periplasmic beta-glucosidase; Pfam:pfam00933 Glycosyl hydrolase family 3 N terminal domain; Belongs to the glycosyl hydrolase 3 family.
 
    0.410
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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