Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
VC82_775Hypothetical protein; Pfam:pfam12771 Starch-binding associating with outer membrane. (560 aa)    
Predicted Functional Partners:
VC82_774
TonB-dependent receptor; Pfam:pfam13715 Domain of unknown function (DUF4480).
 
 
   0.965
VC82_776
Hypothetical protein.
 
 
   0.949
VC82_777
Hypothetical protein.
 
 
   0.904
VC82_833
TonB-linked outer membrane protein, SusC/RagA family; Pfam:pfam13715 Domain of unknown function (DUF4480).
 
 
   0.873
VC82_831
Hypothetical protein.
 
 
   0.794
VC82_779
Hypothetical protein.
 
     0.766
VC82_2627
Hypothetical protein; Pfam:pfam13715 Domain of unknown function (DUF4480).
  
     0.691
VC82_2628
Hypothetical protein; Pfam:pfam13715 Domain of unknown function (DUF4480).
  
     0.673
VC82_772
Hypothetical protein.
 
     0.650
VC82_1040
Putative outer membrane protein, probably involved in nutrient binding; Pfam:pfam07980 SusD family.
  
     0.567
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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