Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
VC82_776Hypothetical protein. (322 aa)    
Predicted Functional Partners:
VC82_775
Hypothetical protein; Pfam:pfam12771 Starch-binding associating with outer membrane.
 
 
   0.949
VC82_774
TonB-dependent receptor; Pfam:pfam13715 Domain of unknown function (DUF4480).
 
 
   0.943
VC82_833
TonB-linked outer membrane protein, SusC/RagA family; Pfam:pfam13715 Domain of unknown function (DUF4480).
 
 
   0.801
VC82_832
Hypothetical protein; Pfam:pfam12741 Susd and RagB outer membrane lipoprotein.
 
 
   0.797
VC82_779
Hypothetical protein.
 
 
   0.677
VC82_778
Hypothetical protein; Pfam:pfam13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella; Similar to ASPIC and UnbV protein containing FG-GAP repeats.
 
    0.661
VC82_777
Hypothetical protein.
 
    
0.594
VC82_772
Hypothetical protein.
 
 
   0.588
VC82_2628
Hypothetical protein; Pfam:pfam13715 Domain of unknown function (DUF4480).
  
     0.569
VC82_1046
Phosphatidic acid phosphatase; Pfam:pfam01569 PAP2 superfamily.
  
   0.561
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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