Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC82_784Hypothetical protein. (483 aa)    
Predicted Functional Partners:
VC82_785
Hypothetical protein.
       0.793
VC82_783
Hypothetical protein.
       0.665
VC82_786
5'-nucleotidase; Pfam:pfam13419 Haloacid dehalogenase-like hydrolase.
       0.656
VC82_787
Hypothetical protein.
       0.651
VC82_988
Hypothetical protein.
  
     0.594
VC82_2888
Helix-turn-helix domain protein; Pfam:pfam01381 Helix-turn-helix.
  
     0.578
VC82_503
Conserved hypothetical lipoprotein.
  
     0.562
VC82_788
Putative DNA repair protein; Pfam:pfam04002 RadC-like JAB domain; Belongs to the UPF0758 family.
       0.523
VC82_1330
Hypothetical protein; Pfam:pfam13585 C-terminal domain of CHU protein family.
  
 
   0.496
VC82_978
Membrane protein.
  
     0.496
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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