Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC82_808Hypothetical protein. (273 aa)    
Predicted Functional Partners:
VC82_1950
Membrane protein.
  
     0.725
VC82_69
Membrane protein.
  
     0.701
VC82_2897
Aminopeptidase N.
  
     0.665
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
       0.648
VC82_2640
Fumarate hydratase.
  
     0.640
VC82_807
Glycine dehydrogenase.
  
     0.638
VC82_1949
Membrane protein; Pfam:pfam03626 Prokaryotic Cytochrome C oxidase subunit IV.
  
     0.625
VC82_1119
Siderophore (Surfactin) biosynthesis regulatory protein; Pfam:pfam01648 4'-phosphopantetheinyl transferase superfamily; Belongs to the P-Pant transferase superfamily.
  
     0.619
VC82_2273
Hypothetical protein; Pfam:pfam14289 Domain of unknown function (DUF4369).
  
     0.608
VC82_679
Hypothetical protein; Pfam:pfam00593 TonB dependent receptor.
  
     0.601
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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