Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC82_82RNA polymerase sigma70 factor; Pfam:pfam08281 Sigma-70, region 4; Belongs to the sigma-70 factor family. ECF subfamily. (180 aa)    
Predicted Functional Partners:
VC82_84
Hypothetical protein.
 
    0.771
VC82_1422
RNA polymerase, sigma-24 subunit, ECF subfamily; Pfam:pfam08281 Sigma-70, region 4; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.770
VC82_2181
RNA polymerase, sigma-24 subunit, ECF subfamily; Pfam:pfam08281 Sigma-70, region 4; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.757
VC82_2168
RNA polymerase, sigma-24 subunit, ECF subfamily; Pfam:pfam04542 Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.751
VC82_83
Hypothetical protein.
       0.726
VC82_55
RNA polymerase, sigma-24 subunit, ECF subfamily; Pfam:pfam08281 Sigma-70, region 4; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.652
VC82_81
Xenobiotic-transporting ATPase; Pfam:pfam00005 ABC transporter.
     
 0.542
VC82_80
Pfam:pfam02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I.
       0.526
VC82_85
Hypothetical protein.
  
    0.469
VC82_79
Hypothetical protein; Pfam:pfam13585 C-terminal domain of CHU protein family.
   
   0.411
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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