Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC82_855Membrane protein; Pfam:pfam00691 OmpA family. (445 aa)    
Predicted Functional Partners:
VC82_856
Pfam:pfam11306 Protein of unknown function (DUF3108).
 
     0.830
VC82_857
Pfam:pfam00072 Response regulator receiver domain.
  
  
 0.627
VC82_2832
Hypothetical protein.
  
     0.558
VC82_854
Ribonuclease HII.
   
   0.522
VC82_851
Hypothetical protein; Pfam:pfam02412 Thrombospondin type 3 repeat.
  
    0.451
VC82_852
Fibronectin type-III repeats protein.
       0.450
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.450
VC82_1975
OmpA/MotB domain protein; Pfam:pfam00691 OmpA family.
  
     0.426
VC82_2490
Hypothetical protein.
  
     0.418
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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