Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
VC82_91Regulatory protein MarR; Pfam:pfam01047 MarR family. (149 aa)    
Predicted Functional Partners:
VC82_92
Pfam:pfam02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain.
  
  
 0.806
VC82_94
Pfam:pfam02771 Acyl-CoA dehydrogenase, N-terminal domain.
 
    0.679
VC82_93
acetyl-CoA acetyltransferase; Pfam:pfam00108 Thiolase, N-terminal domain; Belongs to the thiolase-like superfamily. Thiolase family.
  
    0.678
VC82_2464
SAM-dependent methyltransferase.
  
     0.653
VC82_90
Hypothetical protein.
       0.509
VC82_1258
Pfam:pfam13361 UvrD-like helicase C-terminal domain.
  
    0.504
VC82_2148
Pfam:pfam08241 Methyltransferase domain.
  
     0.484
VC82_1261
Hypothetical protein; Pfam:pfam12705 PD-(D/E)XK nuclease superfamily.
  
     0.473
VC82_89
AMP-dependent synthetase; Pfam:pfam00501 AMP-binding enzyme.
       0.447
VC82_95
Bdb protein; Pfam:pfam00282 Pyridoxal-dependent decarboxylase conserved domain.
       0.405
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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