Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC82_940Hypothetical protein; Pfam:pfam07593 ASPIC and UnbV; Similar to ASPIC and UnbV protein containing FG-GAP repeats. (1103 aa)    
Predicted Functional Partners:
VC82_1044
ASPIC/UnbV domain protein; Pfam:pfam07593 ASPIC and UnbV.
  
  
 
0.913
VC82_2565
Lipoprotein; Pfam:pfam13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella.
  
  
 
0.906
VC82_1046
Phosphatidic acid phosphatase; Pfam:pfam01569 PAP2 superfamily.
 
    0.771
VC82_2555
Haloperoxidase.
 
    0.665
VC82_939
Carbohydrate-binding protein SusD; Pfam:pfam07980 SusD family.
 
    0.601
VC82_938
TonB-dependent receptor; Pfam:pfam13715 Domain of unknown function (DUF4480).
 
     0.532
VC82_308
Hypothetical protein; Pfam:pfam06439 Domain of Unknown Function (DUF1080).
  
 
   0.481
VC82_2796
Hypothetical protein; Pfam:pfam13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella.
  
    0.468
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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