Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC82_987CBS domain containing protein; Pfam:pfam01595 Domain of unknown function DUF21. (429 aa)    
Predicted Functional Partners:
VC82_989
Hypothetical protein; Pfam:pfam06835 Lipopolysaccharide-assembly, LptC-related.
  
    0.787
VC82_988
Hypothetical protein.
       0.780
VC82_990
TPR domain-containing protein.
 
     0.706
coaX
Type III pantothenate kinase; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.
 
     0.574
VC82_986
PpiC-type peptidyl-prolyl cis-trans isomerase; Pfam:pfam13616 PPIC-type PPIASE domain.
       0.565
VC82_991
Putative outer membrane protein.
       0.515
VC82_1881
Flagellar motor protein MotA; Pfam:pfam01618 MotA/TolQ/ExbB proton channel family.
  
     0.451
Your Current Organism:
Muricauda lutaonensis
NCBI taxonomy Id: 516051
Other names: BCRC 17850, KCTC 22339, M. lutaonensis, Muricauda lutaonensis Arun et al. 2009 emend. Hahnke et al. 2016, Muricauda sp. CC-HSB-11, strain CC-HSB-11
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