STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sufSSelenocysteine lyase, PLP-dependent; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. (421 aa)    
Predicted Functional Partners:
SCZ85922.1
NifU-like N terminal domain.
 
 0.999
sufC
Component of SufBCD complex, ATP-binding component of ABC superfamily; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 
 0.998
sufB
Component of SufBCD complex; Function of strongly homologous gene; putative transporter.
 
 0.995
SCZ85920.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
 0.995
SCZ84476.1
Cysteine desulfuration protein SufE (fragment).
  
 0.988
ybhP
Putative metal-dependent hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
    
   0.947
SCZ87211.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
    
   0.947
SCZ85923.1
Nitrogen-fixing protein NifU.
    
  0.935
iscA
FeS cluster assembly protein; Function of homologous gene experimentally demonstrated in an other organism; factor; Belongs to the HesB/IscA family.
  
 0.929
SCZ85646.1
Aminotransferase, class V.
    
0.923
Your Current Organism:
Nitrosomonas mobilis
NCBI taxonomy Id: 51642
Other names: N. mobilis, Nitrosococcus mobilis, Nitrosomonas sp. Ms1, strain Nc 2
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