STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCZ85959.1Putative transmembrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (125 aa)    
Predicted Functional Partners:
rnc
RNase III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
    0.854
pilN
Putative type 4 fimbrial biogenesis protein PilN; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
   
 0.773
lepB
Signal peptidase I; Belongs to the peptidase S26 family.
  
    0.765
SCZ85413.1
Pilus assembly protein, PilQ.
  
   
 0.762
pilO
Putative fimbrial type-4 assembly membrane transmembrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
   
 0.761
SCZ86262.1
LysM motif.
  
     0.746
SCZ85098.1
Putative transmembrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.734
pilM
Putative type 4 fimbrial biogenesis protein PilM; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   
 0.727
era
Membrane-associated, 16S rRNA-binding GTPase; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
  
    0.704
pilI
CheW-like domain.
  
     0.684
Your Current Organism:
Nitrosomonas mobilis
NCBI taxonomy Id: 51642
Other names: N. mobilis, Nitrosococcus mobilis, Nitrosomonas sp. Ms1, strain Nc 2
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