STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU72_0232Succinate-semialdehyde dehydrogenase [NAD(P)+]. (473 aa)    
Predicted Functional Partners:
ADU72_0221
Fumarate reductase flavoprotein subunit.
  
 0.939
ADU72_1296
Succinate-semialdehyde dehydrogenase [NAD(P)+]; Belongs to the aldehyde dehydrogenase family.
  
  
 
0.902
fumC
Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
   
 0.847
ADU72_0280
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
   
 
 0.825
ADU72_0233
Oxidoreductase (putative).
  
    0.599
ADU72_0234
Transcriptional regulator, MerR family.
  
    0.534
ADU72_0231
ATPase, AAA family.
       0.489
ADU72_0370
Oxidoreductase, Gfo/Idh/MocA family.
  
  
 0.487
ADU72_0457
Oxidoreductase-like.
  
  
 0.487
ADU72_1353
Nucleoside-diphosphate-sugar epimerase.
  
  
 0.487
Your Current Organism:
Pediococcus damnosus
NCBI taxonomy Id: 51663
Other names: ATCC 29358, CCUG 32251, CIP 102264, DSM 20331, JCM 5886, LMG 11484, LMG:11484, NCIMB 12010, P. damnosus, strain Be.1
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