STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU72_0802Zinc ABC transporter, periplasmic-binding protein ZnuA. (204 aa)    
Predicted Functional Partners:
ADU72_0800
Zinc ABC transporter, inner membrane permease protein ZnuB.
 
  
 0.987
ADU72_0801
Zinc ABC transporter, ATP-binding protein ZnuC.
 
  
 0.971
rpsN-2
SSU ribosomal protein S14p (S29e) at SSU ribosomal protein S14p (S29e), zinc-independent; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
 
  
 0.568
rpmB
LSU ribosomal protein L28p; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.549
ADU72_1668
Hypothetical protein.
  
     0.529
rpsN
SSU ribosomal protein S14p (S29e) at SSU ribosomal protein S14p (S29e), zinc-dependent; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
  
 0.512
ADU72_0803
Hypothetical protein.
       0.462
ADU72_0450
Mn-dependent transcriptional regulator MntR.
  
  
 0.426
mntH
Manganese transport protein MntH; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family.
  
  
 0.419
Your Current Organism:
Pediococcus damnosus
NCBI taxonomy Id: 51663
Other names: ATCC 29358, CCUG 32251, CIP 102264, DSM 20331, JCM 5886, LMG 11484, LMG:11484, NCIMB 12010, P. damnosus, strain Be.1
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