Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADU72_0806Hypothetical protein. (406 aa)    
Predicted Functional Partners:
ADU72_0805
Hypothetical protein.
  
  
 0.755
ADU72_0807
Hypothetical protein.
       0.655
ADU72_0791
Hypothetical protein.
  
     0.633
ADU72_2056
Integral membrane protein.
 
     0.611
ADU72_0210
ABC-type multidrug transport system, permease component.
 
  
 0.603
ADU72_2231
Hypothetical protein.
  
     0.572
ADU72_1094
Hypothetical protein.
  
     0.494
ADU72_0808
Hypothetical protein.
       0.489
ADU72_0659
Oxygen-insensitive NADPH nitroreductase; Belongs to the flavin oxidoreductase frp family.
  
  
 0.457
ADU72_1601
CAAX amino terminal protease family protein.
  
  
 0.442
Your Current Organism:
Pediococcus damnosus
NCBI taxonomy Id: 51663
Other names: ATCC 29358, CCUG 32251, CIP 102264, DSM 20331, JCM 5886, LMG 11484, LMG:11484, NCIMB 12010, P. damnosus, strain Be.1
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