Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ADU72_1007Ribonuclease BN. (539 aa)    
Predicted Functional Partners:
ADU72_1006
ABC transporter, ATP-binding protein.
 
 
 0.988
ADU72_1008
Transcriptional regulator, TetR family.
 
     0.887
ADU72_1003
Transcriptional regulator, TetR family.
 
     0.637
ADU72_0211
ABC transporter, ATP-binding protein.
  
 
 0.609
ADU72_0951
ABC transporter, ATP-binding protein.
  
 
 0.555
ADU72_1229
ABC transporter, ATP-binding protein.
  
 
 0.555
ADU72_1259
ABC transporter, ATP-binding protein.
  
 
 0.555
ADU72_1350
Putative ATP-binding protein.
  
 
 0.555
ADU72_1719
ABC transporter, ATP-binding protein.
  
 
 0.555
ADU72_1913
ABC transporter, ATP-binding protein EcsA.
  
 
 0.555
Your Current Organism:
Pediococcus damnosus
NCBI taxonomy Id: 51663
Other names: ATCC 29358, CCUG 32251, CIP 102264, DSM 20331, JCM 5886, LMG 11484, LMG:11484, NCIMB 12010, P. damnosus, strain Be.1
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