STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU72_1046ABC transporter, ATP-binding protein. (218 aa)    
Predicted Functional Partners:
ADU72_1047
ABC transporter, permease protein.
 
 
 0.988
ADU72_0957
Lipid A export ATP-binding/permease protein MsbA.
 
 
0.768
ADU72_1044
Osmosensitive K+ channel histidine kinase KdpD.
  
  
 0.579
ADU72_1045
Two-component system regulator.
     
 0.575
ADU72_0928
Maltodextrin glucosidase; Belongs to the glycosyl hydrolase 31 family.
  
 
 0.481
pheS
Phenylalanyl-tRNA synthetase alpha chain; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.
 
 
 
 0.429
ADU72_1352
Hypothetical protein.
  
    0.424
rsmA
SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
 
 
 
 0.421
ADU72_0291
Extracellular protein, gamma-D-glutamate-meso-diaminopimelate muropeptidase.
 
 
 0.409
Your Current Organism:
Pediococcus damnosus
NCBI taxonomy Id: 51663
Other names: ATCC 29358, CCUG 32251, CIP 102264, DSM 20331, JCM 5886, LMG 11484, LMG:11484, NCIMB 12010, P. damnosus, strain Be.1
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