STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU72_1613Alkaline phosphatase synthesis transcriptional regulatory protein PhoP. (239 aa)    
Predicted Functional Partners:
ADU72_1614
Phosphate regulon sensor protein PhoR (SphS).
 0.996
ADU72_1044
Osmosensitive K+ channel histidine kinase KdpD.
 
 0.880
ADU72_0941
Histidine protein kinase; Sensor protein.
 
 
 0.854
ADU72_1690
Sensor histidine kinase.
 
 0.823
ADU72_0987
Sensor histidine kinase.
 
 0.814
ADU72_1137
Two-component sensor kinase SA14-24.
 
 0.808
ADU72_1945
Two-component system histidine kinase.
 
 0.801
prfB
Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
 
   
 0.769
ADU72_1218
Three-component quorum-sensing regulatory system, sensor histidine kinase.
  
 
 0.610
secA
Protein export cytoplasm protein SecA ATPase RNA helicase; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.
  
  
 0.516
Your Current Organism:
Pediococcus damnosus
NCBI taxonomy Id: 51663
Other names: ATCC 29358, CCUG 32251, CIP 102264, DSM 20331, JCM 5886, LMG 11484, LMG:11484, NCIMB 12010, P. damnosus, strain Be.1
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