Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ADU72_1732 | coaE | ADU72_1732 | ADU72_1923 | TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. | Dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.678 |
ADU72_1732 | polA | ADU72_1732 | ADU72_1921 | TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.429 |
ADU72_1920 | ADU72_1925 | ADU72_1920 | ADU72_1925 | Integral membrane protein, interacts with FtsH; Belongs to the BI1 family. | Helicase loader DnaB. | 0.473 |
ADU72_1920 | ADU72_1926 | ADU72_1920 | ADU72_1926 | Integral membrane protein, interacts with FtsH; Belongs to the BI1 family. | Helicase loader DnaI. | 0.473 |
ADU72_1920 | coaE | ADU72_1920 | ADU72_1923 | Integral membrane protein, interacts with FtsH; Belongs to the BI1 family. | Dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.513 |
ADU72_1920 | murC | ADU72_1920 | ADU72_1919 | Integral membrane protein, interacts with FtsH; Belongs to the BI1 family. | UDP-N-acetylmuramate--alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.627 |
ADU72_1920 | mutM | ADU72_1920 | ADU72_1922 | Integral membrane protein, interacts with FtsH; Belongs to the BI1 family. | Formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.524 |
ADU72_1920 | nrdR | ADU72_1920 | ADU72_1924 | Integral membrane protein, interacts with FtsH; Belongs to the BI1 family. | Ribonucleotide reductase transcriptional regulator NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family. | 0.475 |
ADU72_1920 | polA | ADU72_1920 | ADU72_1921 | Integral membrane protein, interacts with FtsH; Belongs to the BI1 family. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.653 |
ADU72_1925 | ADU72_1920 | ADU72_1925 | ADU72_1920 | Helicase loader DnaB. | Integral membrane protein, interacts with FtsH; Belongs to the BI1 family. | 0.473 |
ADU72_1925 | ADU72_1926 | ADU72_1925 | ADU72_1926 | Helicase loader DnaB. | Helicase loader DnaI. | 0.970 |
ADU72_1925 | coaE | ADU72_1925 | ADU72_1923 | Helicase loader DnaB. | Dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.807 |
ADU72_1925 | murC | ADU72_1925 | ADU72_1919 | Helicase loader DnaB. | UDP-N-acetylmuramate--alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.556 |
ADU72_1925 | mutM | ADU72_1925 | ADU72_1922 | Helicase loader DnaB. | Formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.869 |
ADU72_1925 | nrdR | ADU72_1925 | ADU72_1924 | Helicase loader DnaB. | Ribonucleotide reductase transcriptional regulator NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family. | 0.913 |
ADU72_1925 | polA | ADU72_1925 | ADU72_1921 | Helicase loader DnaB. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.798 |
ADU72_1926 | ADU72_1920 | ADU72_1926 | ADU72_1920 | Helicase loader DnaI. | Integral membrane protein, interacts with FtsH; Belongs to the BI1 family. | 0.473 |
ADU72_1926 | ADU72_1925 | ADU72_1926 | ADU72_1925 | Helicase loader DnaI. | Helicase loader DnaB. | 0.970 |
ADU72_1926 | coaE | ADU72_1926 | ADU72_1923 | Helicase loader DnaI. | Dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.812 |
ADU72_1926 | murC | ADU72_1926 | ADU72_1919 | Helicase loader DnaI. | UDP-N-acetylmuramate--alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.492 |
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