STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU72_1998Osmotically activated L-carnitine/choline ABC transporter, substrate-binding protein OpuCC. (311 aa)    
Predicted Functional Partners:
ADU72_1997
Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCB.
 
 0.999
ADU72_1999
Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCD.
 
 0.999
ADU72_1996
Osmotically activated L-carnitine/choline ABC transporter, ATP-binding protein OpuCA.
 
 0.995
ADU72_1026
L-proline glycine betaine ABC transport system permease protein ProV; TCDB 3.A.1.12.1.
 
 0.977
ADU72_1027
L-proline glycine betaine binding ABC transporter protein ProX; TCDB 3.A.1.12.1; Osmotic adaptation.
 
 
0.960
ADU72_1995
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
       0.507
argR-2
Arginine pathway regulatory protein ArgR, repressor of arg regulon; Regulates arginine biosynthesis genes.
       0.440
ADU72_1993
RNA binding methyltransferase FtsJ like.
       0.418
folD
Methylenetetrahydrofolate dehydrogenase (NADP+); Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
       0.417
xseA
Exodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
       0.417
Your Current Organism:
Pediococcus damnosus
NCBI taxonomy Id: 51663
Other names: ATCC 29358, CCUG 32251, CIP 102264, DSM 20331, JCM 5886, LMG 11484, LMG:11484, NCIMB 12010, P. damnosus, strain Be.1
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