STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU72_2091Hypothetical protein; Belongs to the UPF0398 family. (189 aa)    
Predicted Functional Partners:
recU
RecU Holliday junction resolvase; Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation; Belongs to the RecU family.
 
  
 0.750
ADU72_2146
TPR-repeat-containing protein, putative component of Menaquinone-cytochrome C reductase.
  
     0.747
gpsB
Cell division protein GpsB; Divisome component that associates with the complex late in its assembly, after the Z-ring is formed, and is dependent on DivIC and PBP2B for its recruitment to the divisome. Together with EzrA, is a key component of the system that regulates PBP1 localization during cell cycle progression. Its main role could be the removal of PBP1 from the cell pole after pole maturation is completed. Also contributes to the recruitment of PBP1 to the division complex. Not essential for septum formation.
     
 0.728
ADU72_2089
Multimodular transpeptidase-transglycosylase; Penicillin-binding protein 1A/1B (PBP1).
       0.542
ADU72_0355
Adenine-specific methyltransferase.
  
     0.510
ADU72_0643
Lipoteichoic acid synthase LtaS Type IIb.
  
     0.490
ADU72_1864
Lipoteichoic acid synthase LtaS Type IIa.
  
     0.489
dinG
DinG family ATP-dependent helicase YoaA; 3'-5' exonuclease.
 
     0.463
ADU72_2135
Hypothetical protein; Belongs to the UPF0346 family.
  
     0.441
ADU72_1914
ABC transporter, permease protein EscB.
  
     0.433
Your Current Organism:
Pediococcus damnosus
NCBI taxonomy Id: 51663
Other names: ATCC 29358, CCUG 32251, CIP 102264, DSM 20331, JCM 5886, LMG 11484, LMG:11484, NCIMB 12010, P. damnosus, strain Be.1
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