Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ADU72_0246 | polA | ADU72_0246 | ADU72_1921 | Single-stranded-DNA-specific exonuclease RecJ. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.732 |
| ADU72_0246 | recF | ADU72_0246 | ADU72_1156 | Single-stranded-DNA-specific exonuclease RecJ. | DNA recombination and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. | 0.570 |
| ADU72_0246 | recO | ADU72_0246 | ADU72_2173 | Single-stranded-DNA-specific exonuclease RecJ. | DNA recombination and repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.665 |
| ADU72_0246 | recR | ADU72_0246 | ADU72_1585 | Single-stranded-DNA-specific exonuclease RecJ. | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.691 |
| ADU72_0246 | recX | ADU72_0246 | ADU72_1854 | Single-stranded-DNA-specific exonuclease RecJ. | Regulatory protein recX; Modulates RecA activity; Belongs to the RecX family. | 0.647 |
| ADU72_0246 | topA | ADU72_0246 | ADU72_2126 | Single-stranded-DNA-specific exonuclease RecJ. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.727 |
| ADU72_2175 | ADU72_2177 | ADU72_2175 | ADU72_2177 | Diacylglycerol kinase. | Phosphate starvation-inducible protein PhoH, predicted ATPase. | 0.685 |
| ADU72_2175 | era | ADU72_2175 | ADU72_2174 | Diacylglycerol kinase. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.791 |
| ADU72_2175 | recO | ADU72_2175 | ADU72_2173 | Diacylglycerol kinase. | DNA recombination and repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.776 |
| ADU72_2175 | ybeY | ADU72_2175 | ADU72_2176 | Diacylglycerol kinase. | Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.843 |
| ADU72_2177 | ADU72_2175 | ADU72_2177 | ADU72_2175 | Phosphate starvation-inducible protein PhoH, predicted ATPase. | Diacylglycerol kinase. | 0.685 |
| ADU72_2177 | era | ADU72_2177 | ADU72_2174 | Phosphate starvation-inducible protein PhoH, predicted ATPase. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.745 |
| ADU72_2177 | recO | ADU72_2177 | ADU72_2173 | Phosphate starvation-inducible protein PhoH, predicted ATPase. | DNA recombination and repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.792 |
| ADU72_2177 | ybeY | ADU72_2177 | ADU72_2176 | Phosphate starvation-inducible protein PhoH, predicted ATPase. | Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.953 |
| era | ADU72_2175 | ADU72_2174 | ADU72_2175 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Diacylglycerol kinase. | 0.791 |
| era | ADU72_2177 | ADU72_2174 | ADU72_2177 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Phosphate starvation-inducible protein PhoH, predicted ATPase. | 0.745 |
| era | recO | ADU72_2174 | ADU72_2173 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | DNA recombination and repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.921 |
| era | topA | ADU72_2174 | ADU72_2126 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.616 |
| era | ybeY | ADU72_2174 | ADU72_2176 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.849 |
| polA | ADU72_0246 | ADU72_1921 | ADU72_0246 | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | Single-stranded-DNA-specific exonuclease RecJ. | 0.732 |
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